| ... | ... | @@ -56,7 +56,7 @@ The module **[curegen](https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_d |
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Shortly, **curegen** seeks synonyms of the faulty species name into NCBI for each records. If no synonym is found, then it seeks in global databases a the closest genus name related to NCBI taxonomy. By default the consulted global database is 'Fishbase' but let's consult 'Catalogue of Life' instead:
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```
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mkbdr curegen --fasta res_raw_faulty_taxon.fasta
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mkbdr curegen --fasta res_raw_faulty_taxon.fasta \
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--database_globalnames 'Catalogue of Life' \
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--output_prefix res_raw
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```
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| ... | ... | @@ -226,8 +226,4 @@ cgtaa |
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As we can read, all the query records have been found in our custom database including curated records such as `REF-17-0642` with a NCBI synonym species_name=Albula argentea and `YCA_R0449` with a custom taxid=10000000.
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:seedling: We successfully made a custom reference database and tested it.
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:seedling: We successfully made a custom reference database and tested it. |
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\ No newline at end of file |
