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Update Running MKBDR authored by vmarques's avatar vmarques
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Running-MKBDR.md
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...@@ -56,7 +56,7 @@ The module **[curegen](https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_d ...@@ -56,7 +56,7 @@ The module **[curegen](https://gitlab.mbb.univ-montp2.fr/edna/custom_reference_d
Shortly, **curegen** seeks synonyms of the faulty species name into NCBI for each records. If no synonym is found, then it seeks in global databases a the closest genus name related to NCBI taxonomy. By default the consulted global database is 'Fishbase' but let's consult 'Catalogue of Life' instead: Shortly, **curegen** seeks synonyms of the faulty species name into NCBI for each records. If no synonym is found, then it seeks in global databases a the closest genus name related to NCBI taxonomy. By default the consulted global database is 'Fishbase' but let's consult 'Catalogue of Life' instead:
``` ```
mkbdr curegen --fasta res_raw_faulty_taxon.fasta mkbdr curegen --fasta res_raw_faulty_taxon.fasta \
--database_globalnames 'Catalogue of Life' \ --database_globalnames 'Catalogue of Life' \
--output_prefix res_raw --output_prefix res_raw
``` ```
...@@ -227,7 +227,3 @@ As we can read, all the query records have been found in our custom database inc ...@@ -227,7 +227,3 @@ As we can read, all the query records have been found in our custom database inc
:seedling: We successfully made a custom reference database and tested it. :seedling: We successfully made a custom reference database and tested it.
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