Commit 52730817 authored by peguerin's avatar peguerin

readme update

parent 86b1677e
......@@ -82,7 +82,7 @@ You can use the absolute path of the folder of your reference database as the `/
Once you generated your reference database, you need the `db_{prefix}.fasta` file (see Results section above).
Type the following command to convert your reference database into STAMPA format :
```
python3 scripts/formatDB_obifasta_to_stampa.py -f db_{prefix}.fasta -o /path/to/reference_database_stampa.fasta
python3 scripts/formatDB_obifasta_to_stampa.py -f /path/to/db_{prefix}.fasta -o /path/to/reference_database_stampa.fasta
```
This command generates a file `/path/to/reference_database_stampa.fasta` which you can use as a reference database for the pipeline :
* [bash_swarm](https://gitlab.mbb.univ-montp2.fr/edna/bash_swarm)
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