Reference.md

@@ -142,8 +142,24 @@ graph TD;
 
 ```
 
+# Workflow manager
+
+## Environment
+
+### Containers
+
+
+
+### Conda
+
+## Wildcards
+
+
+
+## Rules
+
+
 
-# Rules
 ## write demultiplex table
 ### read 'rapidrun' .tsv file
 ### remove blacklisted runs & projects